PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G079600.1
Common NameB456_013G079600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 381aa    MW: 41657.5 Da    PI: 9.5557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G079600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.1e-14150243354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC.............................................TTS-STCHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkas..........................................kapskKlsKaeiLekAveYI 51 
                         ++h+e+ErrRR+riN+ +++Lr+llP+ +                                           ++++K +Ka+ L ++++++
  Gorai.013G079600.1 150 KSHSEAERRRRERINNHLAKLRSLLPSTTkvrlavvprrreskqrkglsidmikrnqgavpwkflagsstkLTRKPKTDKASLLAEVIQHV 240
                         79*************************777*****************************************9******************* PP

                         HHH CS
                 HLH  52 ksL 54 
                         k+L
  Gorai.013G079600.1 241 KEL 243
                         *99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.132147243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-12150243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-12151175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-14151175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9153249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-14220249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-12221247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.9E-4279326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MCAKKEEYQG DYPRPIHNLQ ASQQHHQLHN DELFGATTGG LVFPQLPWSF PPVHALSPIQ  60
YFTGNPVQDH VHDSFLVPPP SSSYGGLFTP TAPPAAALQF AYDGAPSVNR LRILSDSFGA  120
VGSAPLGLQA ELGKMTAQEI MDAKAMAASK SHSEAERRRR ERINNHLAKL RSLLPSTTKV  180
RLAVVPRRRE SKQRKGLSID MIKRNQGAVP WKFLAGSSTK LTRKPKTDKA SLLAEVIQHV  240
KELKRQTCLI AETSPVPTET DELTVDTSDQ DGKFVIKASL CCEDRSDLLP DLIKALKDLR  300
LKTLKAEITT LGGRVKNVLF ITGEEQESSC SSDGGDVIGS IQEALKAVME KSTCGDESNS  360
SGNVKRQRTN ISTVLQRRSL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7514270.0KC751427.1 Gossypium hirsutum bHLH transcription factor (bHLH3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465192.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y17e-90BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0D2SAG80.0A0A0D2SAG8_G
STRINGVIT_01s0011g02940.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-83bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]